i had the same isue. I had to rewire it who ever intalled my alarm decided to jump the lead off the light switch so everytime my lights went on my alarm would go off. i have a viper with auto start on my sr20 coupe. if i were you get the manual off the alarm website and do it all the rite way . seams to me you might have 2 leads hooked up to a constant that might be whats triping the alarm when you put the fuses back in . go get a CLIFFORD programmable remote there like 35 bucks put the fuses in and program the remote that might help but sounds like your isue is further in .
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