check your crank position sensor and cam sensor you might have messed something up putting the harness back in. the injectors are firing and you are getting spark but the pcm/ecu might not be able to find the right cylinder to fire at the correct time if the the crank/cam sensors are malfunctioning! wiring is always a bitch just double check everything and look for loose ground or bare wires sometimes thats all it is! keep at it and best of luck to you!
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