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There are several ways to do it... As long as there is a way for it to "breathe," it will be fine. I did it this way for engine bay cleanliness. Because of the extra fuel vapor that can be sucked out of the fuel tank & routed to the intake for combustion, other people go different routes...
The canister vacuum line is hooked up to the TB, not the charge piping so it never really sees boost. If you are wanting to keep the added fuel vapors to your mixture, I'd recommend you just keep the evap system intact, and maybe just do some custom relocation or dress-up. As far as adding additional check valves etc, I won't speculate as to how; but I'm sure it can be done.
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