Depends on what your goals are. Just repainting to repaint? Interior going back in? Car a daily fun car or a track car?
I would just leave it. No point of cleaning up seam sealer if its there's no real reason to remove it. Out in the engine bay and body, I would say clean or remove it. There's a paint n body thread on here that people have talked about what they have done, in terms of seam sealer and cleaning up their bay/body ( if you ever get to that point).
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