rear wheel hub warped?

[overb0ost]

ok this is the whole story.

i ran a semi warped rim that was balanced all winter and some of early spring.
i got slotted subframe bushings and coils recently installed and i started hearing a humming sound. i hear it more apparently when i accelerate at 60km/hr to 120km/hr and then fade away. i also don't notice much sound when i do turns or anything.

so i thought it was because of the new parts so i ignored it. just recently i put on my advan sa3s and found out the side that i ran the warped rim (rear right side), the advans wouldn't go on properly. the center bore would either be too tight on the left or right side, and only 1 side would go in all the way. the other side would go in 1/2 way. i then had to use my lug nuts to tighten it all the way to make them go on. so what is wrong here? my whole hub assembly or the studs?

i'm thinking if i should just change the rear hub assemblys with 5lug rear conversions like Ichiba.
could this warped rim really cause all this damage?