S14 5spd swap question

[jlmason]

I've got a 96 s14 ka auto car. At the moment it is throwing a vss code that I can not get rid of.
The question is this- if I go to a 5spd and use a 5 spd ecu will the vss code go away? My thinking is that the auto ecu uses thus for shift points as well as the speedo, but seeing that you shift a 5 spd when you want wouldn't this negate the code? I've replaced the vss with a new one and a good used oem one, as well as the main ecu, the trans ecu and now I'm taking apart another lower harness to see if I can make a mini harness just for the vss. If it does not work I will be stumped.